PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G35750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 241aa    MW: 26132.1 Da    PI: 8.2681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G35750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12250455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   A+++Ik+Lq
  OB05G35750.1  2 SHIAVERNRRRQMNEHLKVLRSLTPAF---YIKRGDQASIIGGAIDFIKELQ 50
                  89************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.06E-13154No hitNo description
PROSITE profilePS5088814.996149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-13267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK  60
KRRLQQQQQH ISPAGGSPSP TPSPRSLITT CSPTGFSSSG GSSAGSSAAV IDISPTLTPK  120
DSNKPAPQLV AELAACCNSP MADVEARISG ANVLLRTLSR RAQLPAVRII ALLETLHLEV  180
LHLNITSMDD TVLYSFVLKI GLDCHLSVDD LAMEVHQTFC DPPPPAPALL HPHPHHHLHS  240
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370001e-111AC137000.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0035I01, complete sequence.
GenBankAC1444551e-111AC144455.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0086G17, complete sequence.
GenBankAP0149611e-111AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692725.11e-119PREDICTED: transcription factor MUTE
SwissprotQ9M8K61e-70MUTE_ARATH; Transcription factor MUTE
TrEMBLJ3MAF11e-176J3MAF1_ORYBR; Uncharacterized protein
STRINGOB05G35750.11e-175(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-34bHLH family protein